NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209192_10001832

Scaffold Ga0209192_10001832


Overview

Basic Information
Taxon OID3300027752 Open in IMG/M
Scaffold IDGa0209192_10001832 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16218
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (86.49%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015169Metagenome / Metatranscriptome257Y
F025991Metagenome / Metatranscriptome199Y
F028789Metagenome / Metatranscriptome190Y
F063653Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Ga0209192_1000183216F028789GAGGMNEETIKGDCSVSLIRDNEDGSSDYQCNFPPEALEALLRLGILTAIKAGIEEARHLKPDT
Ga0209192_100018322F063653N/AMLTLLDICDKLERLDEVTVLELLDIRSADIVAKFMDAIEERADYLEEILDDN
Ga0209192_1000183221F025991GGAGMRCTCCNVILTPFESTMRKVSDNSFLDMCEGCLSYVSDDVKTLTREDLRAEVGIHLADYIDIDDKRDIHD
Ga0209192_100018324F015169GGAGMANKQYYHFKKEQTEANVSSKAEHLYICEEDARWDDVIRQFAAFLDSCGYVGVYEKVDVMLEKVWED
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