NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209084_1026317

Scaffold Ga0209084_1026317


Overview

Basic Information
Taxon OID3300027749 Open in IMG/M
Scaffold IDGa0209084_1026317 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3051
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021769Metagenome / Metatranscriptome217Y
F063697Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0209084_10263174F063697GAGLVNEVRNELNYDLTYFYENRLDKELIVKRKLEDKEREITLKLEDVQFNIEKVKGSIQMIGESTVLVTALKNLEKRREVLSTELNATKELQYNERVKA
Ga0209084_10263175F021769N/AMKNLKLELFNFKKNLTLEQEEVSGIVEGHMNACNELSEKQIIVSLNERLKPYTYDKSVKSLLENLNDDMKNYELLYELKNLYNVINSKNQGEMYRQPLNVLLQTINLDTDQDRMSKILNELAIYDWVPEVKLFVHNLTKSPEKRTNLLSGGKGESTFTIVEQVEDGHVALVNDSWFLLSENSIEKTLLETHVKDEESLKSLRMLETAMRYASVTEDRVNFRISEYLTIGLSVGKKSNLFINDDEMNEETTLESVFDSPIIPIVNKNFYPVLLEVSKNLDKFVELDVVKRVNNLINPYLEIFAFNYKSNTYLYRGMVTLSSNMSQL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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