NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209084_1003048

Scaffold Ga0209084_1003048


Overview

Basic Information
Taxon OID3300027749 Open in IMG/M
Scaffold IDGa0209084_1003048 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12496
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040987Metagenome160N
F094793Metagenome105N
F100258Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209084_100304814F040987AGGAGGMQSTTLKRGPEERKVTLYKNGSAFLITCEVLTSNFHKEGHSEVLYTPDTEAQAEFLYGGAVRFLQGYQYEVVSECLA
Ga0209084_100304816F094793AGGVNNRDRISRDVERSLKTLNTLTPALVADLVRRAGTRAMPDKSPSQGPKGKGTHSDPTLAAVIRKMSGETSNDPIYEAVRTIALTLNDIATLTQLIDQQVRFVTEGVERQKESTIVYCEACGREVSRTPKDRLRSGYCSKCYARWIRQGRPYRATFETIIANEENKNVVK
Ga0209084_10030488F100258AGGVLTVEQITKGIQTEMRKVSQAVDDLAIAGDEAANADATWEIARAKSSLRISAESMEKLTVSELAHRTIIECESEYLAYLIAKNRHDTVKSALRASQSRLDALRTLMTSLRVAGG
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