NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209084_1000256

Scaffold Ga0209084_1000256


Overview

Basic Information
Taxon OID3300027749 Open in IMG/M
Scaffold IDGa0209084_1000256 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)51758
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (7.69%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004093Metagenome453Y
F024266Metagenome206Y
F029671Metagenome / Metatranscriptome187Y
F031097Metagenome / Metatranscriptome183Y

Sequences

Protein IDFamilyRBSSequence
Ga0209084_100025611F029671N/AMKSIELKVTKENIGGRETFLTTYDLLKSAINNPSKEGFSVDEMIKRLRLLNEVDKHKATFEIEEGKFDDSMLEKKATLELEDADFTKLKELFKEMKWGVVSTTIVDLHNEFEK
Ga0209084_10002563F031097N/AMTQEDRNEKIAETLAANQSKSGLVEKLVFTLLPICVSAIGWLLTQVSTLNNQITVLNNKIAVVVTAENKAIPPQGTTIEMEAIRAAAAQSRADMKMEIIDKITNIKESAASERAEIKQRLAVLEYKNKLK
Ga0209084_100025642F004093AGAAGMIVQTIHEILNPFDVETPLGYGVAIFMIAGSIHSNPHFIVKLYESGDVRTVDQNDIKIYGNPTSGESLIPFNKKII
Ga0209084_100025651F024266N/AMARHISPDSVSSKVAELKLGEHLRLENPYTSVMVMVSNLKRKKEHENKVFKIKAVDEITNVTRLK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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