| Basic Information | |
|---|---|
| Taxon OID | 3300027749 Open in IMG/M |
| Scaffold ID | Ga0209084_1000209 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 56264 |
| Total Scaffold Genes | 109 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (12.84%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Croche, Canada | |||||||
| Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F032996 | Metagenome | 178 | Y |
| F033702 | Metagenome / Metatranscriptome | 176 | Y |
| F061600 | Metagenome | 131 | Y |
| F085178 | Metagenome | 111 | Y |
| F091906 | Metagenome / Metatranscriptome | 107 | Y |
| F102703 | Metagenome / Metatranscriptome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209084_1000209105 | F091906 | N/A | MKSTTTAKEYYEAIKSVGAGTLYYLTKKLDSTGEFVFEPLVIDTKKKDLTIRILKRVMLEPNFIAFPGTPEMDEFANSDLK |
| Ga0209084_100020941 | F033702 | N/A | MSKYCKVCQKAIPERRVKLGYTTTCVEHSDAFKYVGVVAASGKCDYEISIIKDKETAEHMQRLMETRGAF |
| Ga0209084_100020948 | F061600 | N/A | MEQALTEIQIAINQILNVKSLIRRKKKTQTEKKRELFASIINSIESIINRQNLMYAELNLDLANYDEAFLDTIDALIILHFGKEGAELIGFYLWDRVSPDGTIEPLLDEYDKPFYLETASDLWNALLYMNPKYGE |
| Ga0209084_100020949 | F085178 | N/A | MAKRIIPKALFEPLEHVQSSDLLDSESLLEMIKKETPLAIKEAFQNKKTFATLFEINGMGLYLDIPRNHWVPALEQCIKFKLEEENFEDCVKIRDLIEEIKKPIKRISKKETDGASTNGDTDSN |
| Ga0209084_10002095 | F032996 | N/A | MPKEKGYSVFEVTNTKNGRKHFMVTSVYNKDNILSGIRSYIDSKSVKGGAKAMATDIANSGKDYHEHFTVKEQGTGLSKEGAEKVRAELVTKAGEVYNQEIQVT |
| Ga0209084_100020995 | F102703 | AGAAG | MKIDKYNKLKLKLEVFKLEQNYMTLDRILYYFSFLGNIFLIYFGYFFIKSVTNSIPPLFPFQEMFFTVFIALFLTGYELTKRFTLEQFFTGIMQVKKLTSQIFLGGMICCFLIAGSFYLSIKGAHRLVDNTETIKTSIDSLTTNKVDSIAKYYDKEITYYRTQPGSKKADRIYRDSIVNALQQTKDVKIQQLETKTEAKANTTLDKNMENSAAFLFITIFLELIVLVGVGFDAFYVLGSFEETKKLLQTPKFKQLELNLRLLKLYYQNGKKAVGDPTLSFNKFRSLVQAQKIDTSQKDLKSFVILCQELDIVKDYRGKKKELMVSYQEAKDIIEKQDII |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |