| Basic Information | |
|---|---|
| Taxon OID | 3300027741 Open in IMG/M |
| Scaffold ID | Ga0209085_1004113 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7858 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (79.17%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Croche, Canada | |||||||
| Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000325 | Metagenome / Metatranscriptome | 1296 | Y |
| F006543 | Metagenome / Metatranscriptome | 370 | Y |
| F008812 | Metagenome / Metatranscriptome | 327 | Y |
| F012108 | Metagenome / Metatranscriptome | 283 | Y |
| F057320 | Metagenome / Metatranscriptome | 136 | Y |
| F086678 | Metagenome / Metatranscriptome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209085_100411313 | F008812 | AGGA | MIQWVGIVITILGLAYTGIKDYQKGDIKFPPMPQKPALTKVVYPVQYCLMAYDPNVDKVFYLHENGQWHDYAPQQRRYAAQTQPYQAQGQEAVGSTHGPQGASVYRYGQSPQASTNPIR |
| Ga0209085_100411316 | F086678 | GAGG | MAKYYIKCGTLELIYSCNKCPRDAAMDAIWETNENDTLDEFIYLDERGYKNYTNADGLTCVLHTSHILKDAGWSIE |
| Ga0209085_100411317 | F057320 | AGGA | MSYVGLYDDAGSKNAFYIIKDKKIDRKRVGFKEFESEKEAKFAHRVQSHLAQLDLAPMVYGDVGFIRRHDGEMTFYGYLTEVARPMPTCHDDEYCDGECFQSECKNGQMIQFVVDKLDSMGLSYNDAHKGNFGYIRRNGKWVAVVIDLGVESFTDWDEDIYGKFDYGKYDYDNGCNCVYCKRFRERG |
| Ga0209085_100411318 | F000325 | AGGAG | MKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLGNGCYAEATENQYKNARTAGFANVITEKNKIRAMILEAKRREKSIRWHERGDWFLNGKLDLDYVANVTWACESILADGDTLPDMWFYTHIYDSRLVSLEKYMNVYASVHDDNDMGEALAQGFKLFAWCDSDMKIAPKRPKSKVKAEAWRQALPKLVVLNATKFVVCPEIRRGRSEITCTGTKDSISCDLCVRGLANVLFPAH |
| Ga0209085_100411321 | F006543 | GGAG | MKKFTFAVDIVADELDRDSVVDSISECLSGSLPGDVHANVKAGEVKAFSEQGYKVWRARVTGVTAEQAGDAHDGKVEKETTEAIA |
| Ga0209085_100411322 | F012108 | AGG | MSVREALNMVSNGCNLDMFEKIVCALEVALGVNQRRCVTITGGMNLDNRIPCIKAIRLHTGWGLKEAKDWTDFLVGGWKYDKWHSAPTGTKQSMMLKTPEAAEALLRDLVGLGCEGFLS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |