NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1007813

Scaffold Ga0209297_1007813


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1007813 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5334
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (23.08%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008080Metagenome / Metatranscriptome339Y
F038674Metagenome / Metatranscriptome165Y
F065779Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_10078136F038674N/AMDRKGFFKTLFGGFVAASAAPSLIKAEETPQPPKDLSLSREVLRIDEHGHLGIGGSSNIGLGTSTPRNKLHVEGIVFHVNDRMLEMAGDENGDFKIHWLDPKENETVNTIVIQKPKDDPWKREFVTIR
Ga0209297_10078137F008080GGAMLKIQIWMRGTMEYSQDTIPGPTPDQTQEQFEEAFKESDDCYWGGDVYETCPYFDNDKRDSIDVYLGGDDNINNDEKPVFVTSNWEDFEFERGGGSNYVPEPPDKLGEVNIWWSHDMKFNYVYFWNNFTEFDPNKLKIQYGVDQKGNKYLEDLIYDGEFPDDYNDFGDTGYGYNGPEFVYHPEQKFAEEQED
Ga0209297_10078138F065779N/AMDSQSIAISINLKIKDQEILLSMEEARDLYSQLKGVLGYNNQLYTIPYSWGNPSPYVTYTINCSDSTNSNWKTA
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