NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1001156

Scaffold Ga0209297_1001156


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1001156 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15355
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (77.78%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006255Metagenome377Y
F016143Metagenome249Y
F017287Metagenome241Y
F027399Metagenome194Y
F041636Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100115612F016143GGAGMDNDYIYTPTGTDITVRWRLTGWIPPSELPEYLAKWKHFQELPLRKLDDNARKEYEMVMKKAKVMRIR
Ga0209297_100115616F041636N/AMATLTEKEIEDIVEKVTERVIENVYTSVGKSVVTKFFWFMGVAAIGLVTYLAGVGHIKVG
Ga0209297_100115617F027399AGGMNFTFTWILDKFGFQPKIEITPKPVAKKPAAKKPAVKKTVRKKS
Ga0209297_10011562F006255GGAMGELNQLMLEHEEYLEEALDCMEYGGELLTQAQVDCIRQACGKPNRWKKNPVLTEVFNDFGTIFGGAK
Ga0209297_10011568F017287N/AMDIRRVFEGEAPCDKCDQALDCKEYEWACRAFSFYVLHGRFEEHTVRHPTRGMFNKIFKEDDKALKNYLKSIKSREEMGIHDLFEE
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