Scaffold Ga0209815_1067295

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209815_1067295

Scaffold Ga0209815_1067295

Overview

Basic Information
Taxon OID	3300027714 Open in IMG/M
Scaffold ID	Ga0209815_1067295 Open in IMG/M
Source Dataset Name	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1251
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location Name	Atlantic Ocean: West Antarctic Peninsula
Coordinates	Lat. (^o)	-64.8156	Long. (^o)	-64.0406	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003043	Metagenome	511	Y
F098077	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209815_10672952	F098077	N/A	MLHLSTQDVVLSIENTKIQKENNHVYQHYHSFFGNTDTFDLNFDDVIFDQLENQEQIPRKRMSYNELFSKQLHIFFMNKNITDALQEKFSTALQFSSVDYWIDNKDYFLSPHVDNDTIKLSLQIYLGEQQPGTVLYDNNKPFKTFNFKNDCGYAMLLNDKTFHGLEYPVKQNGRRSIYVRYQ
Ga0209815_10672953	F003043	N/A	VTSRNCIHNLPMYDMLIHTATGNGNIKLNNNLPLLFSKAKKIFVFTSKQGTFMNWKKTGAIDYGLEKLNLNFIVYRHNMEHYNAQIFEPGHMETVDQYDNIAKKISDLYLDWKFEKNMIYDLSADRYLAY

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