NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209599_10004237

Scaffold Ga0209599_10004237


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10004237 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5268
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021249Metagenome / Metatranscriptome219Y
F030758Metagenome / Metatranscriptome184Y
F043932Metagenome / Metatranscriptome155Y
F068831Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0209599_100042372F030758GGAMSTVDKNFKVKNGLNVAGTATFGSNVVLGETPLRFDTATNKLQLQINGTWVPIALSSEIPDVSNQVSFMDIGLAIDYNGQPIYTLQANGVTPEATSKFVDGGSPSSTDSDVSMVFDSGVI
Ga0209599_100042374F068831GGAGGLATNYPTSKDNFTNPAATESMEGHAALHGNVNDAIEAIENKLGVNGSTDVNSIDYKVAQLETSLSSLDAENASEILGLEGNNDLTVYGIENATSIDSFAKSAYRTVKYTIQVVKNTDVYTSEILASHNGTDIMVSESNIISNTNTSLFTYAFEENSGIISLRVTPVSGSISVRFIRTAIK
Ga0209599_100042375F043932AGGMAKKFKSLLNLLTLAEDPISGSTGDVYFNVTSKNIKIYNGAIWVDLTPGSSDPAPFYMHTHSYDGNVHTVNLQQTINFDTDINNNANVLETSPAIIGLDGGTPTSSYVKPSYTELTLLDGGQIGN
Ga0209599_100042378F021249N/ALTPTQTNKLFYPKSVYDIMVIDSNGNKIKLLEGFMTLNRSVTI
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Institute for Fundamental Biomedical Research
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