NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209599_10001506

Scaffold Ga0209599_10001506


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10001506 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10932
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000368Metagenome / Metatranscriptome1223Y
F028458Metagenome191N
F036662Metagenome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0209599_1000150610F028458AGAAGMAKVNKGTLAIGWCDNGNTDGKFTEGVVSVALQCSNNGIELTHSMRVQGNQIGRQRQVLFDYWADQIKTDWLLWIDSDIVVNMEVVAKLWDTADKIGKPVVSGTYFISKENEGTLAKPYPALFFDVDEHTIQHVHPLPDNEVIKVDSAGFGFVLMHKSIIPKMREKFPNQSMFAEQENVGDKYVGEDIVFFRKMQQAGIELHAHTGALVRHIKRFSLDMDYYAMYWSMQHIKEQMKNKQD
Ga0209599_1000150614F000368AGGAGGMEQFKQLSLTWFRAAASAVVALYLVGETDLKTLAMAGMAGFAGPLLKWLDNSAPEFGRGS
Ga0209599_1000150620F036662N/ALDLYYYDPSVIEAFLPSIIAESYEIPTKIKDLNFKFNKSETANDGNNWLVLRSDIAAAYYKLPEAKQFILKVRFTVDNVEWSETAKELDTTPDGARMKVQRTIASLIRNLGGWKPQPDDDLVEADDDERGE
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