| Basic Information | |
|---|---|
| Taxon OID | 3300027710 Open in IMG/M |
| Scaffold ID | Ga0209599_10001205 Open in IMG/M |
| Source Dataset Name | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12962 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (30.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Ohio, USA | |||||||
| Coordinates | Lat. (o) | 39.849 | Long. (o) | -81.036 | Alt. (m) | Depth (m) | 2500 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001338 | Metagenome / Metatranscriptome | 719 | Y |
| F002038 | Metagenome / Metatranscriptome | 600 | Y |
| F002413 | Metagenome / Metatranscriptome | 561 | Y |
| F004790 | Metagenome / Metatranscriptome | 423 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209599_1000120513 | F004790 | N/A | METLNAETLRWANKVGIKPDRLAFLLACPKYTRTGRNDRPAYIKAENPNHHLQKLGDCYWFRLRRRGKDIVENIASDLETARKRRDEMLAAFDAGKPIPYINIR |
| Ga0209599_1000120514 | F002413 | N/A | MSAPTLVLIAGYARAGKDSLASGILEWSQRPAEHINFADALKEAANHYMDYLGLDGNFFKEDFKVDNRDFLVHAGKFARRMDKDVFARHFANWCPVMKHHDQPSPETVVCSDWRYINELRVCQDILWEKGWKVRTIYVATAGVGPANDEELDSIAEIRASHLFDQEYIFRPNTRNQIMTEGRNLARSWKL |
| Ga0209599_1000120515 | F001338 | N/A | MTTDNNDRPPLTSISTNGTYKLKLIKPKFEKVKQWEDGTTSCRLFFVDDKGFCLSKNFSSKYGKALAMLVGKFSGKYTNEIRLDATPAEYMQYLEPACGQTILVGVEVEPNGEWQGKPQYKYKMTYPRGSQKPTAPEEPLPPEGVPF |
| Ga0209599_1000120519 | F002038 | N/A | MSTVPKGIEKIAATVPKQYALLLFLDGFPYVEFTTRKSADFMTDLNAWKRKTYPSFARSDVRFFTLAPNGEIKELAFNR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |