NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209599_10000805

Scaffold Ga0209599_10000805


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10000805 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17735
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (81.63%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000354Metagenome / Metatranscriptome1244Y
F004924Metagenome / Metatranscriptome418Y
F010245Metagenome / Metatranscriptome306Y
F044488Metagenome / Metatranscriptome154Y
F045751Metagenome / Metatranscriptome152Y
F085611Metagenome / Metatranscriptome111Y
F093757Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209599_1000080510F010245N/AMKRTARSDSNFVIYVARHNGEEYIGLTRKGSTTVAKAVKERWRKHISRAKHEQRDWVIYNYIRAGNWTDWEHEVICVIRGRAEAYAYERELVKMIEPTLNDQYM
Ga0209599_1000080522F093757GGAMKTNRDKNKEHDSREILRVRPKQAPYEFKALEDVIRSWVTGNK
Ga0209599_1000080525F044488AGGMRYGVSYSTDLLDGCVVIRDFHSTPPGRVYAIIPRDSRHEGEQIAQQICDLLNKELPNELGTV
Ga0209599_1000080526F085611N/AMNWELYEVWSVDEDGHEDLIDTTKSLKEARSIAEANLTEYYAECIIYAEDPQGELIEVERIT
Ga0209599_1000080532F004924GGAGMRDAILAKLAEVEEMLLEATLDGEQLAEMDCFTEVTGAFNALTEAVEYYVD
Ga0209599_1000080536F045751AGGAGMGTPLYMELGDACRIVQEYAEIHTGNDILEALKDMEFCYDDLDKEDRVAYNMFMAAGRKMFQPA
Ga0209599_1000080544F000354AGGAGMAKVNYNQFPSFDLNEACDFFDTEKQTNWKKISKFIIADGQEFVNVMEKEFDFEDTTDSEYAAFEAGVRYALAKMNSALDDADLPLEVAEVDLVESMGFMLVRTDDTPESFVKRVFKKPVLMVESWVD
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