| Basic Information | |
|---|---|
| Taxon OID | 3300027710 Open in IMG/M |
| Scaffold ID | Ga0209599_10000792 Open in IMG/M |
| Source Dataset Name | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 17981 |
| Total Scaffold Genes | 32 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (34.38%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Ohio, USA | |||||||
| Coordinates | Lat. (o) | 39.849 | Long. (o) | -81.036 | Alt. (m) | Depth (m) | 2500 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000957 | Metagenome / Metatranscriptome | 821 | Y |
| F001055 | Metagenome / Metatranscriptome | 791 | Y |
| F001923 | Metagenome / Metatranscriptome | 617 | Y |
| F003583 | Metagenome / Metatranscriptome | 478 | Y |
| F014261 | Metagenome | 264 | Y |
| F029754 | Metagenome / Metatranscriptome | 187 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209599_1000079212 | F014261 | N/A | MKSLIALSFIIIFGWLAVVTFCGPELARAINGPEPVKAKAIRRHR |
| Ga0209599_1000079215 | F003583 | N/A | MAKAKQQESGSDNLLLAVTLLTAFAGVSALSSAYIAGYVLDQLQSTDALVMIVTDRGLKSDSADLERNMSTATLALKSVRDLGWALAVGCLGVGMAVFVRSRRQNA |
| Ga0209599_1000079216 | F001923 | N/A | VSAAPFNPEDIPKEVKDGLVASILGGLAMTARLLLSTEPVSLGWVVRRVCAAAITAALVGYAIQEHIQSPGLRMGVVGAAGYAAPECLDYLMRYIKARGEKEVAAVVGKPKPHGKSKAAGKRKR |
| Ga0209599_1000079222 | F029754 | N/A | MSCNTVTFKRGSSFSASMVWNPEPGGIANLVGVTVQSTIIDAQQNEYDLTATVAVGGLSVAFVYPGSTAAWAIGTAKWDIKFLNGGTVFYSETMRIDLIGQVTA |
| Ga0209599_1000079229 | F001055 | N/A | MGTKSIRHIVEATLATYLSTQTGLTTVAFLTGDSAATQTLPKAVVLCESARSPADLPEGEGNFSCSVRITLFSNADDTTLADHRARCAALSGNMRDLTSIKAAFVTSTDAACYDVTVVSEDEGIDERSWATSFSFDVLVVLPA |
| Ga0209599_100007928 | F000957 | GGA | MSSFKHLDGMVALLSEIYEINERVMCGDICSAKAAIASTKMKKLLNHYHEALHEDGASKVSLQAYVAAGGWVGITYSYEVDGFEVAGSQVPRRV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |