| Basic Information | |
|---|---|
| Taxon OID | 3300027710 Open in IMG/M |
| Scaffold ID | Ga0209599_10000780 Open in IMG/M |
| Source Dataset Name | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 18129 |
| Total Scaffold Genes | 44 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 35 (79.55%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (100.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Ohio, USA | |||||||
| Coordinates | Lat. (o) | 39.849 | Long. (o) | -81.036 | Alt. (m) | Depth (m) | 2500 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001125 | Metagenome / Metatranscriptome | 769 | Y |
| F001562 | Metagenome / Metatranscriptome | 670 | Y |
| F003690 | Metagenome / Metatranscriptome | 473 | Y |
| F006744 | Metagenome / Metatranscriptome | 365 | Y |
| F007263 | Metagenome / Metatranscriptome | 354 | Y |
| F011299 | Metagenome / Metatranscriptome | 292 | Y |
| F045755 | Metagenome / Metatranscriptome | 152 | N |
| F051930 | Metagenome / Metatranscriptome | 143 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209599_1000078020 | F011299 | AGG | MMTRKDYVATAEILKYASDKTHPALFSKIVNDFAEMFAKDNERFDVARFHEASNYNVPKFTSR |
| Ga0209599_1000078022 | F045755 | AGGGGG | MSQIAGMWICDNCDTLAVVSVLTDTIQITQCKCVTNERETNV |
| Ga0209599_1000078024 | F007263 | AGG | MLDTKYIDETEFYFIKDEMKFHCDESQFVYVCKEHGEQMGCYYCEFDYDKKCECE |
| Ga0209599_1000078026 | F006744 | AGAAGG | MNLDEFKAHITATREASKAEALSVLSATMSVSTTTKGDN |
| Ga0209599_1000078027 | F001562 | GGA | MKSQLEKDIEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPVAFAIGLVEHEDYLAELEEE |
| Ga0209599_1000078029 | F003690 | GGAGG | MISNGLELALNEYGLEFDSFLGAIYLPWHTIIITALLVTAYKIYKRKKNK |
| Ga0209599_1000078040 | F051930 | AGGAG | MRIQYVSTYISMSEEGLVEKLLCPVDQSLLFCNQDLEDNIFLYCLECKYLKNIGAATYENIVKRVNLNDNNKQ |
| Ga0209599_100007805 | F001125 | AGGCGG | MGDRANFGFRDSKENIVFLYGHWAGHRMLENLADAVQIAHPRWNDEAYATRITISQMIGDEWASETGWGISVNELADNEHKVPIIDWKNKTFTLMEEDLQTVVFSTSLEAFVAKYCSQLSVV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |