NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209599_10000071

Scaffold Ga0209599_10000071


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10000071 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)73042
Total Scaffold Genes142 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)81 (57.04%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001443Metagenome / Metatranscriptome693Y
F011670Metagenome / Metatranscriptome288Y
F020169Metagenome225Y
F031498Metagenome / Metatranscriptome182Y
F032277Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0209599_1000007115F020169AGGAMSSTVRIPWNRNYENERNWNEVCARAIEMFGLPGNRFTTHANIHYMDFIFKSNKDALMFAIEHNGIIVPDEDLTVEAVGRYMQ
Ga0209599_1000007129F032277AGGCGGMFNAIGSLMLAGMLAQEPRCVKWTWTGDVYNRRVVCLEWDKPPKPPKDKDPKKT
Ga0209599_1000007159F031498GGAMIEQDKKKQREVEFIQQYTLSKEDFRKMVLEKMERAKVYSQAVRKREIAQERL
Ga0209599_1000007185F001443N/AMFWENYMPMYETTVRTPQGEEKKRIYADTPQEAKKLFEQLYGGPRAVPYIPHIIPS
Ga0209599_1000007192F011670AGGAGGMEISRAEQSVIKYNLEQYRLDQARLEKQREQDYAKKIEERRLDQVIAERVSRNLRLDLDKGRILDIEC
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