NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209443_1294366

Scaffold Ga0209443_1294366


Overview

Basic Information
Taxon OID3300027707 Open in IMG/M
Scaffold IDGa0209443_1294366 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)541
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014129Metagenome / Metatranscriptome265Y
F080046Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0209443_12943661F014129N/AIKEITISNVQADEANLIVCVFCSDYASEFYCVKCNEYKGLMTLGEWLSYTQESWLS
Ga0209443_12943662F080046N/AMTITLANEKAKDKFFQPPSKYINHKVVEIVSLNEDSGIATVILEKYTISGNANVYKNNNVFTVELPYSEFQNLRGWNDN

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