| Basic Information | |
|---|---|
| Taxon OID | 3300027707 Open in IMG/M |
| Scaffold ID | Ga0209443_1003664 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8607 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (29.41%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Michigan, USA | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001338 | Metagenome / Metatranscriptome | 719 | Y |
| F001780 | Metagenome / Metatranscriptome | 635 | Y |
| F002413 | Metagenome / Metatranscriptome | 561 | Y |
| F004790 | Metagenome / Metatranscriptome | 423 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209443_100366410 | F002413 | N/A | MTETPPPMAAPTLVLISGFARAGKDTLASGLLEWSTRPAEHINFADSLKEAGNHFMDYLGLDGNFMAEDFKCENRDALVAFGKFARRLDKDVFARHFANWCPVMKHHDQVSPETVVCSDWRYINELRVCQDILWEKGWKVRTVYVSTAGIGPANDEELDSIAEIRASHSFDQEYIFKPNARQQIMSEGRILAKSWRL |
| Ga0209443_100366411 | F004790 | N/A | MEALTPETVAWARKVGLSPDRVAFLLACPKYTVSKGHRKSDKVITDNPNHHLQRLGDCYWFRLRRRGTDIVENIGHDLLTARQRRDEMLAAFDSGQPIPHLNNK |
| Ga0209443_100366417 | F001780 | GAG | VTKAASINDLTAPHAEAKSFDAWFFAQPKKVQDKMRESGVLPYREMVQSRHVFNIDPNHPSWATKDGDKERTEVDSFISRDHVGIMLKAFMDALACSDQFHFRRHVELIRWALSLPGCLDSRTIARMYGRSHIWAQKRARQIRSTVNGDACGLFPHINSRRDKHKMPRR |
| Ga0209443_10036649 | F001338 | N/A | MTTENNDRPPLTSISTNGTYRLKLIKPKFEKVKVWEDGTCSARLFFVDDKGFCLSKNFSTKYGKALAMLVGKYSGKFTEEIRLDATAAEYLQYLEPACGQTILVGVECEANGEYNGRPQYKYKISYPKGSQKPTVADTLPDAPPF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |