NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209447_10009064

Scaffold Ga0209447_10009064


Overview

Basic Information
Taxon OID3300027701 Open in IMG/M
Scaffold IDGa0209447_10009064 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2902
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000624Metagenome / Metatranscriptome977Y
F000703Metagenome / Metatranscriptome928Y
F000781Metagenome / Metatranscriptome895Y

Sequences

Protein IDFamilyRBSSequence
Ga0209447_100090642F000624GGAMPAHWLAALAALVPIGVQFVIFLRWLHRRMRDDEIARAFVRDVATNHLPHIYNALQKIAAEQGIELDETPMVRFVEINGQRRAS
Ga0209447_100090644F000703N/AMLIREYRESDLAALRAIHAAQGFDYPLPDLQNPLFLTKLVLAADDAASVVGAQDPAPLQQPPHSDENRVQCAAPAVLGTPPGKILGAALLRLTAEAYLLLDPKQGTPRERWQALLALHASAERDAWRRGLEDVHAWLPPPIAKKFGKRIARLGWLRDDAWTPYCKKLEGK
Ga0209447_100090645F000781N/AMLTVAQLAPLKDRDPYLYETLTKVVSAVNATSQRAGVDPSTPAPAPTQVASVMVQASNGWFDISVTDPSNSRPGLFYFAESDTTPAFAAPRVYFMGASRNLYLQLGNQSLYWRAYSQYVGSLPSAPVTFGSPPTAVAGGGIAGPAPLPSSGSGVLPNGLVRGGNGFGINPGSRVTRQTIL
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