NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209445_1023912

Scaffold Ga0209445_1023912


Overview

Basic Information
Taxon OID3300027700 Open in IMG/M
Scaffold IDGa0209445_1023912 Open in IMG/M
Source Dataset NameMarine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - NADW_A/KNORR_S2/LV (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2324
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-37.9728Long. (o)-44.9905Alt. (m)Depth (m)2502
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000107Metagenome / Metatranscriptome2222Y
F001156Metagenome / Metatranscriptome763Y
F006126Metagenome / Metatranscriptome381Y

Sequences

Protein IDFamilyRBSSequence
Ga0209445_10239122F001156AGAAGMSKRKPKDYSKAILERIVGTKSKATLAMAFKLAFAEKYNVKREEIKQGIVDKVYNKEKVE
Ga0209445_10239124F000107N/AMKNTEVVDTTSKYIVKSTGIGSETNEELVDAEELTAGTDGSKVSLIECYHLIEGTGTLTIRVGSETLELTGKGKYGLRPDQLKFGNDKQILLTTDSNVKSYLLVTEFRRN
Ga0209445_10239126F006126GGAGMSDLSFKKFTRTLNERRYIGPQGTVEYNKLSPKMRAAINDVYSMINKASYPIVSKIEGIIRAVSKRHGVSTYDIDDYFDNELIK
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