NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209710_1005566

Scaffold Ga0209710_1005566


Overview

Basic Information
Taxon OID3300027687 Open in IMG/M
Scaffold IDGa0209710_1005566 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7903
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.69%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013325Metagenome / Metatranscriptome272Y
F038691Metagenome / Metatranscriptome165Y
F090614Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0209710_100556611F013325N/AMANKNKPDMKIVKDGSVESKLTKNYENQVGKTGSKEEQAALAKELVNDSPRKMSEIIKDKREALKKNEDLLRDLQTNEYDIPMSSPKLYKQLMKFLEKDAEWGHTTATGLVMLYSNLKENSKIVQSKDWDGIVKLRGTSITILWTMVTSMKGKGFFEARNFIELMAAFGQDLSTVVQKVHVDNSALRENHAKLSELDTEVNHPDVILDVAIDKYNEAEEELTDLMNEVDPVVETV
Ga0209710_100556612F038691N/AMGFHRRHIDNNQVVKLYEDGGLIRVKEWYTQGVDALVTETGLASEVGSILSDDDWIVMGTQIQEKGIIKLIQKHLGIVDSKK
Ga0209710_10055669F090614N/AMFKLFKTIKSWFLPNHEGPFPYSTDGFIKAKRWAKNQSHPKLPDHPSQSLWSYVSSNWIDSEYKLNEINKVKTNKNKTI
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