NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209710_1002771

Scaffold Ga0209710_1002771


Overview

Basic Information
Taxon OID3300027687 Open in IMG/M
Scaffold IDGa0209710_1002771 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12109
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (57.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001582Metagenome / Metatranscriptome668Y
F002716Metagenome / Metatranscriptome535Y
F005495Metagenome / Metatranscriptome399Y

Sequences

Protein IDFamilyRBSSequence
Ga0209710_100277111F005495N/AMLKWNRGGNAPSLNMKKYTILQDTVASGSKVYAGDIVELNDPEGHSLCAYNKAEIHVEKPEAKKTERSVGLETSEVKAPKKRAKK
Ga0209710_100277112F001582GAGMPIESAADFSSYLDTTTGHGVTATFFEVQSVLWDQRTGLIDTWFDIDSGDAYSINIIIDQEYFNIEGGTIPVAGYKPRAIVKSSDVPYISQEDKLIVNAITTNKGNVLKPETTFLIKTVEPDNTGLVSLVLEEQ
Ga0209710_100277113F002716AGGAGMSQYRMETEEDMSAYFDINFGHGVSAVFTHSGTATTINIILNNEYVEQDEGIGVEALKPIAYCKTIDISNVVFGDTLNVSAIKDVDGNTLKAAQNYTIVNIQKDRTGFSALMLEEI
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