| Basic Information | |
|---|---|
| Taxon OID | 3300027687 Open in IMG/M |
| Scaffold ID | Ga0209710_1002142 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 14133 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (81.25%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Arctic Ocean: Canada Basin | |||||||
| Coordinates | Lat. (o) | 75.235 | Long. (o) | -150.0691 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F046713 | Metagenome / Metatranscriptome | 151 | N |
| F061869 | Metagenome / Metatranscriptome | 131 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209710_10021421 | F061869 | GGAG | MPSPYYFGQSPDESLGDSPRYFYALRRNTDGEIYLIRSDQLKDKDSIDINLPGPPEETFEDFEPGVDFFDGISAEHVKTKENMFWTQYKWDQRSILYYIDDEGMLVQRINQNYAYPSGTS |
| Ga0209710_10021422 | F046713 | AGGA | MPTVFKQSVVTDIGTVPVDVLQIQEGVKATVVGCNLANNSDYDTVVVDVQVVDENSTVGNYARSVPIPPGSSAKVITQGERLILPATAGLRITSDTDSSVDATISYVEIS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |