NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209710_1000178

Scaffold Ga0209710_1000178


Overview

Basic Information
Taxon OID3300027687 Open in IMG/M
Scaffold IDGa0209710_1000178 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)71083
Total Scaffold Genes110 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)90 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010951Metagenome / Metatranscriptome297Y
F021205Metagenome220Y
F044157Metagenome155Y
F091853Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209710_100017845F091853GAGMRFFLTQCEYKWSHAHKRMETLWVRRELGDELSKYIVKQGYKLVLIRSKSQSLPEDLYCRCDIYVDIPNNKESTLFALKYSKALPLKRGKYDNEYW
Ga0209710_100017862F044157AGGMNILHNFLIPEAEHRNKFWAKQPIDDPQTINGFNGTFAFSEHSRIPQGIVEFLLEHFHKKCFKTANSWKKDHIEAVELDEINELMNEIWDGPGSMTKLAHLTNEMRIARLWDNDDEE
Ga0209710_100017873F021205GAGGMDNKKQKIEDKIEQQVERWDLFARIIPTVFLVVCSILIFTGIVDFQQAFWAGLGLFAVTAVTWWFWTIYTIKHLVRTLHRASKNLAEVRREFRDVSKDLEDLRNNNDEA
Ga0209710_100017874F010951AGGAMMKHKKFIIIKAATSIISGISMVTLIVLGITYLGFTNAFVFNNAGIAVTNNPVNGGQIDFILEGSRKHECTLTGVYSDAYDNATGEKFELDFARKIYIRSNDYLGSDTGIVDHQWAMPVPDDMPPGVYEVKLYSEFDCVYLLFKQHKSQMFDNISLIIE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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