NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208975_1001488

Scaffold Ga0208975_1001488


Overview

Basic Information
Taxon OID3300027659 Open in IMG/M
Scaffold IDGa0208975_1001488 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9885
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000468Metagenome1102Y
F003825Metagenome / Metatranscriptome466Y

Sequences

Protein IDFamilyRBSSequence
Ga0208975_100148815F000468GGAMSDFTPDWKLTVGGVDYTDIAIADVQHQAGRTDIYQQPLPSYIQITLVALNGQTLPFDINDSLDLQIKDSSASYVSLFGGDITDITVEVRNAGAAAKVIQYTLLAMGSLAKLTKEIWDDNISQDEDGDQIYGILSSVLLGSWNDVPAASQWSTYDATETWANAVNLGLGDIDQPGLYTMTAQSQTVDTIYNIVSDIANSAFGYIYEANNGNIGYADADHRQNYLLTNGYVELDAGHALGAGLSTIMRSADVRNDIYINYGNNFNSQVTATDATSIATYGYKAETINSRVQGAVDAQAIADRYIDQRAYPQPAFQSITFPITNSEIDNADRDDLLGVFMGMPVDIRNLPSQISGGTFQGYVEGWSWSTRFNELFLTINVSPTAFSQVAMRWNTTPITEAWNTIDPTLTWEYATIVA
Ga0208975_10014884F003825AGGAGMGYIAFINGKGLQVVMDDNGVHLEESIVKCEVCDDDRIFKDGTCFKCHELINYDESN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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