NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208975_1001476

Scaffold Ga0208975_1001476


Overview

Basic Information
Taxon OID3300027659 Open in IMG/M
Scaffold IDGa0208975_1001476 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9926
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (8.70%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032628Metagenome / Metatranscriptome179Y
F083778Metagenome / Metatranscriptome112Y
F096710Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0208975_10014761F083778AGGMKKIDMGKYILLIGKDATEIFDYYNVPEMHGLNRADAQAEEVDLSKGNGVYIYGLTNYDPADKKLTAKDPYKPFLFINLGTFKKYSVTEKATG
Ga0208975_10014764F096710N/AMKNQLPTQTALVQIYPCKSHDFLYVIKNVTTDTWLPRIPVAVVKESIKTKGLYTILYRLYTNEKGYESIFISSAQKLVTEK
Ga0208975_10014765F032628N/AMALTANYVGNYIRKEGEQKGKTFHIYTIQGTVAELKEYANTPQFKKYPRKSATGELQMHTMYMDAFNDSLPLYKKQDGNYTLDQSETRKNLSRLELLQDASPALANAFADRLADKIFGAGKVSSSIANSFIQEPVASGEDAELNTDM
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