Scaffold Ga0208975

Basic Information
Taxon OID	3300027659 Open in IMG/M
Scaffold ID	Ga0208975_1000823 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027659 Open in IMG/M

Scaffold ID

Ga0208975_1000823 Open in IMG/M

Source Dataset Name

Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14176
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (15.79%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

14176

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (15.79%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.701094	Long. (^o)	-82.854085	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Great Lakes, Michigan, USA

Coordinates

Lat. (^o)

44.701094

Long. (^o)

-82.854085

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F031407	Metagenome / Metatranscriptome	182	N
F034112	Metagenome / Metatranscriptome	175	N
F051740	Metagenome / Metatranscriptome	143	N
F060725	Metagenome	132	N
F064518	Metagenome	128	N
F090088	Metagenome / Metatranscriptome	108	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_100082311	F090088	AGG	MEDKESLGKKVFLEFYSNFILDDEIEETGRVFYLAQKASMIHLKLIRGILQNDEYIINMAYLKDVINKIKI
Ga0208975_100082312	F060725	N/A	MIKLFIGGQEVDLNQDEVNVTIDYSIENIELGNISGAHSKRNVTLPATKTNVNIFQNITDAGAIVTNAYKLLSARLEADGVPILTGKAQLEGADLQAINSGFVASNFKVSLIGNNADWFADVGNTLVRDLGWDDIEINTTNVKTNYDPLTSEHCYILMKWKAWENETFIVNNEMTPAIFVWQVLEKAFLNRGYQLNSIFKTDPFNRLIIPMGLELGADYLNDFVNLRASIPSPSLLSNSNSSPILITFTDETTSPNFDTGGNYVSGVYTVPITATYTLKAELNIANTILVPTPTDEVLVGWEINGVFEEGEDLGQEPSFDDSVIIEFITDLVEGDLVRFVVKHNNCGFLMGLNGSIEIIGSKAIFETGRTFDLQYVIPISWYVRDVIADLTTIFNLAWETNVLSKQVYAYPKDDYTLRYRADATGAISLTTFEGFFKGSDKYDLNTRDVEGSDFQILDGYKSSQVLAYSTDDDTTNKEEERRGVNIYSGGYNFPTDRFDNGVEFIYTKFFAKTIHISDVDITSGGIYGAQMPLVFGDDYNTVTDAEPNYNLAPRLLYYAGRRNGLDGYIRLYDDTSSASSAFDFPAAFMVNYNDPSGGDFNLSFSDEVTNYTNVMQGIFKTFHLQTYKRIELGKVYTTFAKLKPKDITQLSFRRKGIIGSSNFIIQSIEYNPKSNSPAKTVLLYDEKPNVNDLTKVSNTITLAGSTPQSGTVTGSGSGLVGANGASVNIQLSYTPFINSMTNVLVLPVNSGITQVSNTNANVLVFQNGQKLIPTIQYIIGGSTIGINVNTHYDGANYEVVVNGVTKG
Ga0208975_100082316	F064518	N/A	VAESGLFNLTGFTPMESAEKAKLYQVFQYLASKAAEEKVIDEISKAKK
Ga0208975_100082317	F034112	AGGAG	MVIFNIGNKQIKYNYPETASDITLEQYIYFAKFLLPEHPKVELEAIQYMNERDAVYQKILPYAKKLKVDSKNVQQINLVYDLGKILQEKEVKDNVRRFLPSLIDQWNELDKQLTTRLEIMDEVWEAKERYPYMAKVVNYFTGIPLDACFGKVADSLELKYLVYIYGKIMNAINTPTETKYKQLYDFNGKVYTLPERLMEKSTLLEFTMAAQYDKAMNQVKNGDPEGLLNIMAVLLKPLGEDYSDELFEQNKVDFLQMSLQTSYEVAFFLTKLSEKYTLDLQTSMLQRAMENLN
Ga0208975_100082318	F031407	N/A	MTDKEKALIIIDLIEKITQEIIDKPMQRKKYLQMRGHLEKAVKLTGNGIKREWSRPPSLPIVSHAKAEPIPFIPTTTETNGDLLADNIPVVTKKARRR
Ga0208975_10008232	F051740	N/A	MIVRDKSKLMIYVGNDPTGKAGILKKAIGNFTQAELRGWHSVNPASVSQHVIYTPEKNTYEPSQENDSSSTEQD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208975_1000823

Overview

Ecosystem & Geography

Associated Families

Sequences