NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208960_1028996

Scaffold Ga0208960_1028996


Overview

Basic Information
Taxon OID3300027649 Open in IMG/M
Scaffold IDGa0208960_1028996 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2015
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003688Metagenome / Metatranscriptome473Y
F010599Metagenome / Metatranscriptome301Y
F045545Metagenome / Metatranscriptome152Y
F070870Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0208960_10289963F010599GAGMEMMFLIFFATLSFSFALSYWATFDKLKKSNLLVAELFIKNRALEEVNSQVNNGINMSDDTIHKENFIKFLSDSRDWAFEYIEKSQQTIKEVSDDLKVKGLDNYSEKLLALLPEMGQGKK
Ga0208960_10289965F070870GGAGMKKKTKIVILIVLSFLTAVSLWTAANFKKISDLDIFDIEED
Ga0208960_10289966F045545GAGGMIKQIVLFFICKLKSHSLVDAGSCPFTGKNYVACLRCGATITK
Ga0208960_10289967F003688N/AMMYTDTMRKAVHSITPPKGFGVEIIDNEHFLTVKLDERKFLHMVHDDKISALQYVVKLKKALEECGAIVLVTREAVK
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