NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208133_1069693

Scaffold Ga0208133_1069693


Overview

Basic Information
Taxon OID3300027631 Open in IMG/M
Scaffold IDGa0208133_1069693 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary, USA - metaG S.535 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)835
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001338Metagenome / Metatranscriptome719Y
F013292Metagenome / Metatranscriptome272N

Sequences

Protein IDFamilyRBSSequence
Ga0208133_10696931F001338N/AHNTMNTNNPNDRPPLTSISTNGSYMLKLIKPKIEKIKVWEDGTVSARLFFVDDKGFCLSKNFSSKYGKALAMLVGKFSGKFTEELRLDATPAEYLQYIAPACGQTTIVGVECEPNGEYNGKPQYKYKMMYSKGSQKPVINNIDLSDAPPF
Ga0208133_10696932F013292N/AMTEPPQPMSAPTLVLISGFARAGKDTLASGLLEWSTRPAEHINFADALKEAGNHFMDYLGLEGNFMAEDFKCENRDALVAFGRFARRLDKDVFARHFANWCPVMKHHDQVSPETVVCSDWRYIN
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