NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208942_1003166

Scaffold Ga0208942_1003166


Overview

Basic Information
Taxon OID3300027627 Open in IMG/M
Scaffold IDGa0208942_1003166 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5758
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (94.74%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.5046Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004051Metagenome / Metatranscriptome455Y
F005741Metagenome / Metatranscriptome391Y
F029434Metagenome / Metatranscriptome188Y
F063685Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0208942_100316615F004051GAGGMTIDNHTYEVGDLFTTLKSKRTGVIKEIHPQASGSVRVLLELPTKETRWTSVSAKTLLG
Ga0208942_100316617F005741AGGMNNRFRVEIYDANKLNDVTIYSEQGVDKEYLTELVFSNLNKFYGQVNAYVFDTVKNKKITAMFLDEQVVTQVNSR
Ga0208942_10031662F063685GGAMTIELDTYGFMFDTEWAYVSLSWQLLITSALLGIVYKFYKVRKGK
Ga0208942_10031666F029434AGGMKKYTFGVWLDIDAEDEDMALSLFDSVVKNTFVSDSFCFEWKEVADEIAI
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