NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208951_1001737

Scaffold Ga0208951_1001737


Overview

Basic Information
Taxon OID3300027621 Open in IMG/M
Scaffold IDGa0208951_1001737 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9302
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020171Metagenome / Metatranscriptome225Y
F038246Metagenome166Y
F038669Metagenome / Metatranscriptome165Y
F071228Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0208951_100173713F038669AGGMNETKLEPHLQKLVDLGESGTDIMHGHMKNLMYECETKLSDISELQDNPEYKYLSGRMDTLTEIYIMTYNLSFALNERIISRG
Ga0208951_100173716F020171GGAMKIKFNQTKKSEQFIDTVAEHITGAMIQEIGEDLFDNWANACLDEGEDYAEREFMAYASPELKKEYNEFYGYTEKDEYYLC
Ga0208951_100173721F071228AGGAMEDTYGATVTPAVPATYNPSQLVQYKVIQGEDVTYPISKVTDLEWDLQLGRTNRESLDNLKSTVRELEELLIELYNPNYTKEEALKQIAELFGFELTKTVTVTGTIAFEVTVEVPLDEMDDFDAHYKLGDELSLTSYGSDVEVGDWTIENTDVDWN
Ga0208951_10017374F038246N/AMGILDNFEIFLEKTEETEKCHYCQSKAKYSDIAKVDEKRYDVVGVCECHSFKGLSS
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