| Basic Information | |
|---|---|
| Taxon OID | 3300027621 Open in IMG/M |
| Scaffold ID | Ga0208951_1000377 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 20580 |
| Total Scaffold Genes | 26 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (34.62%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (44.44%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.504638 | Long. (o) | -83.045851 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001055 | Metagenome / Metatranscriptome | 791 | Y |
| F001298 | Metagenome / Metatranscriptome | 727 | Y |
| F001725 | Metagenome / Metatranscriptome | 645 | Y |
| F001780 | Metagenome / Metatranscriptome | 635 | Y |
| F007416 | Metagenome / Metatranscriptome | 351 | Y |
| F021107 | Metagenome / Metatranscriptome | 220 | Y |
| F026553 | Metagenome | 197 | Y |
| F029754 | Metagenome / Metatranscriptome | 187 | N |
| F039626 | Metagenome | 163 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208951_100037713 | F001298 | N/A | MSLYADFLADAKEMIADFGVAGTANSGAITFQCLISDPAVMTVLEAGGYMERTQYSVRMPAVTASWTLPDGSNGSSAALLSAGVPIASLGQGKKIVASGKTVRITTQTYKPGSAWITLVVIDDNQ |
| Ga0208951_100037715 | F001055 | AGG | MGTKSIRHIVESTVATYLSTQTGLTTVSFLTGDNNATQTLPKAVVLCEAARAPSDLPEGEGNFSCSVRITLFSNADDTTLADHRLRCAALSGNMRDLVSIKAAFTATGDASCYDVTMQSEDEGVDERSWATAFTFDVLTVFPA |
| Ga0208951_100037716 | F001725 | GAG | MAAISNGTVCLYAISGTVTNLFVQSYSLSSSFNAEATVVDETGLTKTHRLDDRKSEITIEGVCKTSSVPVLGATLSFTLNALTAYPSGSASVSFSGVITKIDEKGSNKGFTAVTVTAIDYEGITM |
| Ga0208951_100037722 | F029754 | N/A | MSCNTVTFKRGTSFGAAVVYTPEAGGLANLIGVTVTSTIIDADRNEFQLVTVVAGNGLSFTAEYDGDTGDWAIGTARWDIKFTNNDSIFYSDTMRIDVIGQVTTV |
| Ga0208951_100037725 | F021107 | N/A | MITLLLIAVAFAGGFYAGYKNAKSAKVEKAVDILKALKGK |
| Ga0208951_10003773 | F026553 | GGAGG | MKRNLTPSQLNYLAKKRWWTKVRLNAWRTMPEKMEAIRKEATAVAKTVKDEKNDRIREAMSAWPGTMNTSQLREHILKDFTYDGKVSSLIWRMRRHGMMEFKVDGLWHNLCHLPAE |
| Ga0208951_10003774 | F001780 | GAG | VTKAASINDLTAPHSEAKSFDAWFFAQPKKVQDKMRESGVLPYREMVQSRHVFCIDANHPKWAFNPTADEHRTEVDAFISRDHVGVMLKAFMDALACSSSLKFRRHVEMIRWALSLPGCLDSRTIARMYGRSHIWAQKRARQIRSTVNGDACGLFPHINSRRDKHKMPRR |
| Ga0208951_10003775 | F039626 | N/A | MGPCDLKTRQLGELARLEKAKRDAAIVEAYRLCGTIHGTRKAFEFMHSRCVVRKVISKAGLYDKCKRERMQIKRFKASPKKSKWADRTYSKTHGSELEMQTQAVQMLKDACVSYPRHIEREVQVPGCQMRADLVGYNWAIETKKECSSQGMLTAMAQCQVYRKHLSRRHVCILLPDDIEPAAFYVSECLSYGIPVIKMSQLIWWVNTVQNDAQPN |
| Ga0208951_10003778 | F007416 | N/A | MAQGLFIGLTECELLDLKAKALALITEGKTLMSYSDSGSSASKQFAMPPKEMLAEAMFALSRLDPATYGRRTTVISTSWSTRRD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |