NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1064991

Scaffold Ga0208974_1064991


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1064991 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1021
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009669Metagenome / Metatranscriptome314Y
F014229Metagenome / Metatranscriptome264Y
F091423Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0208974_10649911F091423GAGMPTGIIQALLSAVSGIFAAINNVFGAKNTKEMKDRQEAQKEVDHQSEIENAVKDKDLEQARKHISS
Ga0208974_10649912F014229GGAGMNKLQLATVALLSVFLGACATTNTGKVDVATSVENTLPYVKPAVVLACTVVLDQAVSGNDRIEKAKMINHVAAIVEGLTAGNTPTPAQLQKALNDYLPAEKTHWANYVTVIKDLYAQQFARLDGNGALAVKVLNAIASGCKDATASYVE
Ga0208974_10649913F009669N/AMKTMLSKIFGANWRSSTSGVTTVIAITTAIAIHSDPSLVAFLPDIAEVYITGISKLVAVVSGIVFALTVKDSAVTGGTVAQTIEAEKRTGENI
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