NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1017466

Scaffold Ga0208974_1017466


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1017466 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2256
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023329Metagenome / Metatranscriptome210N
F031460Metagenome / Metatranscriptome182Y
F084156Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0208974_10174661F084156AGGAGMVTDLCWYDTKQGDNCQWECSDIPGSFYCKNCDGLRVWNRFAQAYSFYVREGHYGF
Ga0208974_10174665F023329GGAMVEETQDKDKELAQLEAYFKYNISTDEILSGRLKILMADLSWRMDLPTWNKEELDIMCARMDALVEVSNLLYDIQWHRLNWERKVNGKSN
Ga0208974_10174666F031460AGGAMAKVIDSVEISLQMWANVTLSAEEIQDIYPEFADMVDFDNTDELETALDEYMNMNYMDHVQYADGALDECTIDFVWEDDGSE
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