NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1003580

Scaffold Ga0208974_1003580


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1003580 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5567
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (56.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020171Metagenome / Metatranscriptome225Y
F038669Metagenome / Metatranscriptome165Y
F047650Metagenome / Metatranscriptome149Y
F071228Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0208974_100358011F047650AGGMAEDVSPVYFCDSCNVARASYLIKLLDGELAFCTHHYNKSKKALDEKAYEVIELNKKENLPKLKEMAE
Ga0208974_100358014F071228AGGAMEDTYGATVTPAVPATYNPSALVQYKVIQGENVTYPISKVTDLEWDLQQGRTNRESLDALKSTVRELEELLIELYNPNYTKEEALQQIAQLFGFELSKSVTVTGTINFEVIIQVPLDEVEDFDAHYKLGDELSLTSYGSDVEVNDWSIESTDVDWD
Ga0208974_10035806F038669N/AMLMSYKDTLLEPHLQKLVDLGESGTDIMHGHMKNLMYECETKLSDISELQDNPEYKYLSGRMDTLTEIYIMTYNLSFALNERIISRG
Ga0208974_10035809F020171GGAMEIKFNQTKKSEQFIDTVAEHITGAMIQEIGEDLFDNWANACLDEGEDYAEYEFMQYASPELKQEYNKFYGYTEKDEYYLC
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