NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1002336

Scaffold Ga0208974_1002336


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1002336 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7093
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003049Metagenome510Y
F008741Metagenome328Y
F009142Metagenome322Y

Sequences

Protein IDFamilyRBSSequence
Ga0208974_100233611F009142N/AMNNSVQINVEDALDNILANVSGLNVYKTNRVGAKLFPFATISASVGGQLLGNYTGVYEVAVTIDYSDTAAKISQEAFDAEYCSIFEAFYSETPPLFTKIQNNILDTKVYTARITGQTPTIRTAKRAWQRGLKMSLICTPSELDDGLRYLNFYQKQNSMYVAVI
Ga0208974_10023363F003049GGAMKNANKIIGCRKSKKGDNTKGVGIIEFGKSRIDKTRYVLVDITYDKKAGKELYEAGMIALKHDPEAVIEYAIKKALAGMAKCKK
Ga0208974_10023368F008741GAGMSVKTIKYSQRLGDVLRCLPAAKYLADQGHEVFFDCLEQYHGVFDLASYVKGGNKGDVLDLEIWPNRYNDFIKSRKNWHDFVYSHPEIKEADKTNIILDKLDDKPAEGLPETYNLVAPFGISQTFYRNPLTLIQDAVKELGKESVFVLCPPDIKIQGLNTYTAQSVEQMVKAIRGADQFLAVNSSPIIIASAVRRGKESRFWGEKNESEVQNVFQFEGLVRVD
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Institute for Fundamental Biomedical Research
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