NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1002074

Scaffold Ga0208974_1002074


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1002074 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7626
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (15.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010084Metagenome308Y
F010836Metagenome / Metatranscriptome298Y
F011075Metagenome / Metatranscriptome295Y
F029655Metagenome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0208974_100207412F010836N/AMSTSNFHNVNASAIFAVPLENEYDYEDLVDNLKSELKDNSDYVDYGKTDKNELRSFPSRTLGSIRKYHQYKDFYVEVCVTPVIRSGYYSGVNLDWNVDYLINGDASYDSPDFYIDDIAHYGNLSKSAATKYAKLAEKKAEKIKNEIVDELEALYNDYSDRYGVTAVFSNGETIYHKL
Ga0208974_100207414F011075N/AMSSFETHLGIIVGSHLNDAMIEISINPKLAKQRMKFVKALTFFNEDLTKGVTDEYCSWLWDELFENQRWGGPYIKGTDYETK
Ga0208974_100207416F010084N/AMEITEEVIYHLSKNIKTKIGVSSIDGIGVFAISDIKKGEEVFPIWQSDTGIYTIPTDRLTDIPNQVLELLNMYFINTERDYKIIRLFKGFNFLFHGFSFCNSAYPNENNTNISNNGIALRDIKAGEEILEWYTKNIN
Ga0208974_10020742F029655N/AMNKLVFSVNESNCVKFLKKYPMVTHLMVESKGKDIMSAYKKFLKLKDMNESKLGGRGECIGSVAFGTKTFYKYDWDSCTGWAEVFQFVYSKNKNK
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