NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1001368

Scaffold Ga0208974_1001368


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1001368 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9567
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015571Metagenome / Metatranscriptome253Y
F042160Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0208974_10013681F015571N/AYDSIVSDMAFKQGDMFDRNDYPAKEQLVSKFGVQLFVSEVPMSDFRCGIASDIAEDLFATYSQQAQEIVSHVMVEQQSRFIEVMKSISHCCGVDEVGIDDNTGETKTKKRKIYDTTILKAKEMCDTFKGFNLSGDPDLEEARASLEKALSGVTAEDIRESDAVRHAVKEDIDDILGKFSSFKCV
Ga0208974_100136810F042160AGGAGMSRYYLDGFGSEDELNELLASDVLPLVRELQFKYNLKVMGKVMNVGYPQTDKDSYMMCYPNGLAVGKVWTTKVGGANSDQLEFCFRTPFYVKSRGSDQNDRETIRSTKLSSLMAVLKRQEVVRDKKLIMDSKVKQVKLGVSTLRRAMGTSDKQNSFTPDEIHVMLATLLGENTDGIIPVLDLNKCKNTLDIYKEADRIRDIKREESKRFFKNPFYLIGIDDYKHLLIGKFKMTTLHSDTSKIEYEIIEDFKRVRTVEEYPELVPLMTMMKVSYETKECRRLGVLNFPIMDGYDEGLDATFFYGSQPTNYEQAWMATPCPT
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