| Basic Information | |
|---|---|
| Taxon OID | 3300027608 Open in IMG/M |
| Scaffold ID | Ga0208974_1000254 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 23285 |
| Total Scaffold Genes | 29 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (27.59%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.504638 | Long. (o) | -83.045851 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003579 | Metagenome / Metatranscriptome | 478 | Y |
| F005113 | Metagenome / Metatranscriptome | 411 | Y |
| F013396 | Metagenome | 271 | N |
| F022191 | Metagenome | 215 | N |
| F046325 | Metagenome / Metatranscriptome | 151 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208974_100025410 | F005113 | GGA | MTKDEHKSAIVQQLQQQSLNLLVDSLAAALAEIEQLKAADADKPAP |
| Ga0208974_100025411 | F003579 | N/A | MGSPAAPKIGTLFEVRYVNYTDPTAVADCHLLDAEGVEIMPVGLVPATAEQCAVWVNDEKFAGVLAVNAGFELPAE |
| Ga0208974_100025416 | F046325 | N/A | MSSDQIVTDIPKEFVRKWWWEIQNGLPNEKAKVHEHQARLAAEMRKQGSTQMEGLGQMAARINSRLFFRLQGQHGNNVHEWMPEYLKDNPHLCAVGYRPKVNPARHGLTGGWMKNKD |
| Ga0208974_100025426 | F022191 | N/A | MAKGVKVDGKHGKATYSPQRLINSVAMATLDGRGLGLKKHPSLGDVTVDDRRVLQRIVGITVEEFNQRLIGKLDTLADKIVDRMLETVDDTPLQTLGFNLAVAIDKRQRIAGLNATQGANVNIQVNNYGSLSKEEIVARLSGKTGVPTIQSAPVDIGNCNDIDAKISKKTGAVKD |
| Ga0208974_10002549 | F013396 | N/A | VTPRRLLLLAVLVLGLVVVLGLALRSERVLTAGLPLRIIVASEADAWTLAGPSAVVVLGTGSMAPYIPSAPAGADPLRTVSALAVLVSGASYSDIKAGALVIYVPRWAGRNVMHQAAQIDAGGWIMTGLGNKDYENRERVTAANFVGIVQRTYIWR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |