| Basic Information | |
|---|---|
| Taxon OID | 3300027608 Open in IMG/M |
| Scaffold ID | Ga0208974_1000078 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 42386 |
| Total Scaffold Genes | 81 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 66 (81.48%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.504638 | Long. (o) | -83.045851 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000354 | Metagenome / Metatranscriptome | 1244 | Y |
| F007524 | Metagenome / Metatranscriptome | 349 | Y |
| F015332 | Metagenome / Metatranscriptome | 255 | Y |
| F026201 | Metagenome / Metatranscriptome | 198 | Y |
| F033309 | Metagenome / Metatranscriptome | 177 | Y |
| F033642 | Metagenome / Metatranscriptome | 177 | Y |
| F096603 | Metagenome / Metatranscriptome | 104 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208974_100007833 | F015332 | GGAG | MFTADQVWGLAVAADRINGGYFKEDVYVMENECQKRVTQANKLMVKQWLREGAFTEATAEDIEKGRAVRNYFNGFLLKQISGKINDFEQQALRIAQMDEFTGRNMLEFAIVSCLPGVMLRDQIRNELAREVRGSTQLQGAVGDKIQGEIEVVKCYYSKDYDKYRVTAKLVDSFVDFWYNSNLEAGTRLNIKAKIKSVRGDNTTQLNFVKRA |
| Ga0208974_100007849 | F026201 | AGGAG | MQNTKQYITETEDGYELCINVNEQCDNYTVESITMFISNVNEAEDGDEACYYDGDLAVNYNIDTLQNDETAQTMGTLLLRNVHSDDEVTVAMGHFYWDGAFTERLQEIIANAGFASASDITTSEWGMQDEGRASYDACELADEIRNIMQTTTA |
| Ga0208974_100007852 | F007524 | AGGA | MRKLSNTHALAINKLMLPLISTLAHIDDDNDINMYKMYADDIAHNVSALCVFNNTLDAEVLHDNIMRQDTCPREHFYTVLKYIEDNKLINTNMFACR |
| Ga0208974_100007855 | F096603 | GGAG | MDLIDFILGLALGGFIGFKVAEHIHVTMFRDILVKLKVSESDMRTMMQDLQKDLPEDDLPRVEVKVEMVNDQIYVYRLDTMEFLCQGATREAVMICLADRFRKDFTIVLSEEHGAQYLKESPTI |
| Ga0208974_100007862 | F000354 | AGGAG | MTKVNYDAFASFDINECCDHFDSEKQSNWKKINKFIVADGGEYAHIMETEFDFEDTGAGEYEAFQAGVKYALTKMNIAFEAAALDLQVCEVDLVESMGFVLVRADDEPEDFVKRVLKKPVMMVDSWI |
| Ga0208974_100007865 | F033309 | AGGA | MTTRQKALSFLYAGLVMLLGTMGGIETSPDLVTYDGVYLMVFALVGIAFMAVGASYAVEGARE |
| Ga0208974_100007869 | F033642 | AGG | LPDVVKPLLDDQGKPLPPDLALQKIEKLNIPWTDIHLYQPSNYAWPKVLADKLAIPVENHARRGACFQQIARQCAAAQATIAPDDVVIVMWTYISRLSLQWPARTAVPFCTIANPNWAWKTVILGFNKFFGLEPSKTSTKDAEDRIQQYIEKSTKETYLDPLGVYNQYYNNMVLQTMTDGFLRATGARVIHLSVEMDPVLGQLESARSQLDPTLREPYNIPDPAEWYRVPVDYDSCYVLLDPSIPPAENDMHPSVAHHANFAEHIHKLYFK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |