NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1000047

Scaffold Ga0208974_1000047


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1000047 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)54204
Total Scaffold Genes89 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (14.61%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041196Metagenome160Y
F051707Metagenome143N

Sequences

Protein IDFamilyRBSSequence
Ga0208974_10000473F041196N/AMNLQENIQRIRSMMGLLVEEQQDKSIVLLDGTSSAGKSHTLKHLNAVPYYEANNPNQWVIIATDDFSGTGELGADGEERRLKLDHPNIRQWAKENADAGIVSGNYRKDGKEVPENPYEDEYIQNTDPRLWYVAQEIKTGPFKKIVIDDIGKEILQYLPDVKLKYILLHTPLYILLKNVKERNDRAKNNPNFKYDGRDVKMVLGQYSQKYEATQSKPDIDKGDPTTVLTKGGLTDLLQKNGMSDEHIDEFLNSINLTEDGDYYIKVRDSYMTPETQLVNVDSERTVYLKNIDNALK
Ga0208974_10000476F051707AGGAMMNLNESDKNKIWLLRRLETQDIKYYLNEQIDSLTDQISPCGYSTSEDYKDVIFEVASSNFINHFSDELYVKHEMSEIEEIIWHLLTKKYGNYLINQFDGRICDDEY
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