NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255079_1043364

Scaffold Ga0255079_1043364


Overview

Basic Information
Taxon OID3300027601 Open in IMG/M
Scaffold IDGa0255079_1043364 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepB_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)975
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.1812Long. (o)-123.1834Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000934Metagenome / Metatranscriptome828Y
F010469Metagenome / Metatranscriptome303Y

Sequences

Protein IDFamilyRBSSequence
Ga0255079_10433641F010469N/AMNVIAPVDNTNNIRYADFVRVTTPSATYRFATTPMAITVPAVDAQPFDALGQLIQIGDAQRDIKSTANETSFTLVGIDTAMLGWVLSQEVKGSQIEAWHGFFNTNGELITTGGTGGLYQFFNGY
Ga0255079_10433642F000934N/ARNQRISTSEILTVVPFAFDMKPMQYLYYSQNRGLLNSLRIPDKSLEQYLNFGVTGWKNYIEYQGDMTGAEIDATLWQTASANKVLVLGSLPTMGASEYIVRTGDFCQVGRYAYIATADVVRGSGSTVNIPVHRNLIDAVTSPVGAVIGEYGTTVSLGGDTYLGVTFPVILREYPTYTLMPITKDSFINWSGSFKAFESVL
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