NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209733_1000148

Scaffold Ga0209733_1000148


Overview

Basic Information
Taxon OID3300027591 Open in IMG/M
Scaffold IDGa0209733_1000148 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10793
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002492Metagenome / Metatranscriptome554Y
F003336Metagenome / Metatranscriptome493Y
F016467Metagenome / Metatranscriptome247Y

Sequences

Protein IDFamilyRBSSequence
Ga0209733_100014814F016467GAGMTNKSGLQALPSAKNLKRAFECAVRDIYEVGLTGKVSEYRTPIAQRAGTGVAGSSVDAEKRALSDAARALAQLWKVSPSR
Ga0209733_100014815F002492AGGAMSASCTSPQLGWHVLYHAALFETDRNKVPRLIEEAEKAILSRIKELFPSSADHIEEDVVLDDALYALRALRNCIHSEAAAA
Ga0209733_10001487F003336GGAGMSATGTAAYAMYPRNVALSDVVSALNQAGFGNEDICMVLSPAHPVASAVEDATIGNVAREQSATSARVIGWFSQLGAVVIPTVGFFIRSQAFFQALLGEQNLPTLSRGSGTLLGLGFSEDEARRLGHQLCDVGALVYVSCPERSKADGAIELLRRAGAKEAASLGMAPAARAAAA
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