NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208009_1000226

Scaffold Ga0208009_1000226


Overview

Basic Information
Taxon OID3300027114 Open in IMG/M
Scaffold IDGa0208009_1000226 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15773
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (90.48%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004668Metagenome / Metatranscriptome428Y
F009524Metagenome / Metatranscriptome316Y
F093778Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0208009_100022610F009524GGCGGMTDLTILDAIAARLTAVTPPTGYTLRKAYATPPESLPVVPCAVLFPGGDQITVGNGNRSTVLTVNVVVYLLPIPRMDDKYRDLYTWRSWLRTAFDGAVTISGNAVQVAVTGTTLGTDTYADQDYLTVQATAEVTVYDTVAFTA
Ga0208009_100022617F093778GGAGGMDAELAALDQAMAASAVHGWQVTLLDQIDGVWTAHASDKIDGEPLATGTGATRTDALLSLTAALESR
Ga0208009_100022621F004668GGAGGMTHTDHIEQVHLQGWTRVDTAPMEWVAVVPNDNHTAFGGTLWRIENDGKEYAVGVTAGHPVSAALDYDAAGRALAVLIKQEVGA
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