NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0207944_1005524

Scaffold Ga0207944_1005524


Overview

Basic Information
Taxon OID3300027105 Open in IMG/M
Scaffold IDGa0207944_1005524 Open in IMG/M
Source Dataset NameForest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF018 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1127
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location
Location NameHarvard Forest LTER, Petersham, MA, USA
CoordinatesLat. (o)42.471116Long. (o)-72.17263Alt. (m)Depth (m)0 to .1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003614Metagenome / Metatranscriptome477Y
F017410Metagenome / Metatranscriptome241N

Sequences

Protein IDFamilyRBSSequence
Ga0207944_10055241F003614N/ACGRAIQSLLMKPSELPGTRSLYRLTNRALTQIKELWQYAGEAELPSESLLQAQVEALRILHIDVPLSAKRQFQLFCSEHFPGLANIIDCLAADQVWALLSMRVQLAETDQPHAQSAALRFGGLGRRYVLVVFEDCPAGLLSHADGSGLFPETRPSSPPFPGKISASP
Ga0207944_10055242F017410N/ALPLLKEFALPLSIFGSKDVHPFTILTEIMNKRPPAKKPQAKIQTVKKQIPVKKIAPDRTEELVKKHLGNIGEAENAFKSVSALLEKHKTKYPELEQYIEHVSASDRSIQILEDIKDPRRAHSIFKIPLTGVEPAYQVAHPGEKDHTNVDRAAWISTLEEALAKAIVQIVLSRQAEQASQAVGSPAE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.