NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208941_1000426

Scaffold Ga0208941_1000426


Overview

Basic Information
Taxon OID3300027077 Open in IMG/M
Scaffold IDGa0208941_1000426 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C27A4_35 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11460
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (28.12%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameMonterey Bay, California, USA
CoordinatesLat. (o)36.25Long. (o)-122.2099Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008384Metagenome334Y
F016811Metagenome / Metatranscriptome244Y
F024348Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0208941_100042618F016811N/AMQNNEESDGQVIYDLGIRLTWKKKRGNGYTNMYFGTKDRPFQFVTRAKSIDHINRNPIMIAKMMSFVGATGKSVYDFHIIEEFYRKEISNSFSHKEEDYIKEFGE
Ga0208941_100042625F024348AGCAGLTQKKLIGCARHTNMLFEEHYEDLTDAEANLILDIYKVIDELVYFGEPVTLVRLGFELGIRPDELSDYLAIIVTILNKVEEEYAEIRQGSN
Ga0208941_100042626F008384GAGGMPRYDKALIEEEAFKSVEQGYLTEELGTFILQRAIEISGSAFVTDGNNELKQALIDSAVMRTCEKFLHYYQSGKSAANLIISIIYSTMTNKIVSLNHSDVYGQNIKGYLTFIEDGKAVTKLKRYIKDDYLSEKL
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