| Basic Information | |
|---|---|
| Taxon OID | 3300027055 Open in IMG/M |
| Scaffold ID | Ga0209516_1016607 Open in IMG/M |
| Source Dataset Name | Groundwater microbial communities from S. Glens Falls, New York, USA - Naphthalene biodegradation metagenome 12C3dose (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 745 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | S. Glens Falls, New York, USA | |||||||
| Coordinates | Lat. (o) | 43.099444 | Long. (o) | -73.604444 | Alt. (m) | Depth (m) | 98 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000926 | Metagenome / Metatranscriptome | 832 | Y |
| F008792 | Metagenome / Metatranscriptome | 328 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209516_10166071 | F000926 | AGCAG | MARFEASEPNGVAVQQLEGLVRTAIFKPATALVGHLLQGAADRMDAAYPPKPGEQRKGRVPLTIHCIFGSFILERDYYYHEGKKQGHYPADAALGLEQGNTPALAR |
| Ga0209516_10166072 | F008792 | N/A | GRTTEIFENAERACFFRDIISMYIDILLMNSPKPAQLFEQIAQIHRMERGKLSVMREGPQGTHYKHQVWEDGKNLSRYVSGDQAEALQQAIDGYHRFEDLTEQYAQQVIDVTRAELSARSKKKKYRLRRKSSWPKTRKSSS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |