NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209648_10122335

Scaffold Ga0209648_10122335


Overview

Basic Information
Taxon OID3300026551 Open in IMG/M
Scaffold IDGa0209648_10122335 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2096
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000217Metagenome / Metatranscriptome1557Y
F000440Metagenome / Metatranscriptome1137Y
F001138Metagenome / Metatranscriptome767Y

Sequences

Protein IDFamilyRBSSequence
Ga0209648_101223352F000217AGGAGMSAKILTFSSDGDKTLLEYDPATADMEEVNKVIAEYEAQTGAQPFDMATGERIEKVTRAQNEVLMVHPIAGG
Ga0209648_101223353F001138GGAVHFKPGGMCMAPVNLFLIAFLALIVWRLAFGGLQRRPLARAIAPRQHRHNDLFEEVLHISDPGSVAVTAGNGFENSSDGLYLLGRKDRAKAYLRRIVALTGATQMGNDYILDVGTARFYVSYRYVRRLRDAADPKGAYEETCFYPVHKGMPKAEEIATALLQLANNPVLYDKWAVQNGMPFKADGQVFTRVQGPARDEDTN
Ga0209648_101223354F000440GGAMRIRIKCAPARRAAEHLKRIAALTGAEQVCRERYWLRAGRKNFLVDCEFVRVISHDGKSTCFSVAADSGMPSAEVVASALLQLKNNPRLFNKWRKGWEYTFKANGKMFRDVDQLTKDET
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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