NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209648_10067533

Scaffold Ga0209648_10067533


Overview

Basic Information
Taxon OID3300026551 Open in IMG/M
Scaffold IDGa0209648_10067533 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3018
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002603Metagenome / Metatranscriptome544Y
F009929Metagenome / Metatranscriptome311Y
F017176Metagenome / Metatranscriptome242Y

Sequences

Protein IDFamilyRBSSequence
Ga0209648_100675333F009929N/AMKFFCSRGRIAWQFFSSIDMKTIILILAAIATMSFAMCLDAEGQRLPLPEGQADSRTPLPVQFRVSVEKGIITLTDLNSGKVMGRTTFERWGIVTPTQDKLRHVALDVTAAVVAGNGNRERIVNPLHKVYTVADHKKGKAAYVTMTLEHNLAFVLSSDTQTNGRYEALIENRP
Ga0209648_100675334F002603N/AMSLTAIAVRFPDEPVKLDNVEERRVLTALEVIYEGGSLHGKTADFPTRDLERVVAGLHLRNWNFFETYKRTICVDIRSQRTIFRYAGTFKPNNSGWWERLFAVLRIRKLKPIVI
Ga0209648_100675335F017176N/AMNEKRKSKPKKFTDMLRPWILARDTDGNVVIGREVIEGIRDSGRTKRCLVIEGLPPQGAVGNN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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