NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209805_1000509

Scaffold Ga0209805_1000509


Overview

Basic Information
Taxon OID3300026542 Open in IMG/M
Scaffold IDGa0209805_1000509 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23574
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (43.48%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015318Metagenome255Y
F091735Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209805_100050910F015318N/AMAFAARRWAVAEQNPRTRRGPAAWRWPAVVGAVLCLLTIPPIALAAIRVPADSVFSGYVVIARDAYVYQAMWRTGWQGAWLFHSAFTAETLPGIVLYSWYLWPAHLLGWAAGPWLYHLARVAAAGALLAAVFMLTGELFRPRLLRRWAFLLCVLGGGVGALLPSEVHIGPVVTRATEMSVPGTGVADLIAMAPHLSWAMALMCLTMVAGLRLRHRASRRWLLGGIAAILGLQLIYPQLALLVVGALLGWSIVRRHRHAGWFALAGALVQLPYLIYLFWVWRTTPAALSVIRPVLEVGDPFGFLVLSHLMASGLIVVAIWRRRLRGDLLLPALWIAGMTIFMFSPGISGVLGRSFMASSIPFGLCATPGLLALLREVRGLRWRRRLLAVALTASSFFGIFSLAQAYWVAGFRLDPRAEYESRAEAVLLARLAPRVSARDLVLTNYLDGIFVPAQTDARVFAGHPEMTIDAPRKSSEALAFFHDWDQVERARFLAANHIDYVLTTDGEATGSLERDPGLRLIEREGGAALFEVTR
Ga0209805_100050923F091735N/AGDALHTAAAAGAVVLAIARRPDIPPMGDRVVTLWAADLAQFPARHVVEALFRQARIDTYA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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